BACKGROUND: Our previously published CUDA-only application PaSWAS for Smith-Waterman (SW) sequence alignment of any type of sequence on NVIDIA-based GPUs is platform-specific and therefore adopted less than could be. The OpenCL language is supported more widely and allows use on a variety of hardware platforms. Moreover, there is a need to promote the adoption of parallel computing in bioinformatics by making its use and extension more simple through more and better application of high-level languages commonly used in bioinformatics, such as Python.RESULTS: The novel application pyPaSWAS presents the parallel SW sequence alignment code fully packed in Python. It is a generic SW implementation running on several hardware platforms with multi-core systems and/or GPUs that provides accurate sequence alignments that also can be inspected for alignment details. Additionally, pyPaSWAS support the affine gap penalty. Python libraries are used for automated system configuration, I/O and logging. This way, the Python environment will stimulate further extension and use of pyPaSWAS.CONCLUSIONS: pyPaSWAS presents an easy Python-based environment for accurate and retrievable parallel SW sequence alignments on GPUs and multi-core systems. The strategy of integrating Python with high-performance parallel compute languages to create a developer- and user-friendly environment should be considered for other computationally intensive bioinformatics algorithms.
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An illustrative non-technical review was published on Towards Data Science regarding our recent Journal paper “Automatic crack classification and segmentation on masonry surfaces using convolutional neural networks and transfer learning”.While new technologies have changed almost every aspect of our lives, the construction field seems to be struggling to catch up. Currently, the structural condition of a building is still predominantly manually inspected. In simple terms, even nowadays when a structure needs to be inspected for any damage, an engineer will manually check all the surfaces and take a bunch of photos while keeping notes of the position of any cracks. Then a few more hours need to be spent at the office to sort all the photos and notes trying to make a meaningful report out of it. Apparently this a laborious, costly, and subjective process. On top of that, safety concerns arise since there are parts of structures with access restrictions and difficult to reach. To give you an example, the Golden Gate Bridge needs to be periodically inspected. In other words, up to very recently there would be specially trained people who would climb across this picturesque structure and check every inch of it.
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Machine learning models have proven to be reliable methods in classification tasks. However, little research has been done on classifying dwelling characteristics based on smart meter & weather data before. Gaining insights into dwelling characteristics can be helpful to create/improve the policies for creating new dwellings at NZEB standard. This paper compares the different machine learning algorithms and the methods used to correctly implement the models. These methods include the data pre-processing, model validation and evaluation. Smart meter data was provided by Groene Mient, which was used to train several machine learning algorithms. The models that were generated by the algorithms were compared on their performance. The results showed that Recurrent Neural Network (RNN) 2performed the best with 96% of accuracy. Cross Validation was used to validate the models, where 80% of the data was used for training purposes and 20% was used for testing purposes. Evaluation metrices were used to produce classification reports, which can indicate which of the models work the best for this specific problem. The models were programmed in Python.
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The paper introduced an automatic score detection model using object detection techniques. The performance of sevenmodels belonging to two different architectural setups was compared. Models like YOLOv8n, YOLOv8s, YOLOv8m, RetinaNet-50, and RetinaNet-101 are single-shot detectors, while Faster RCNN-50 and Faster RCNN-101 belong to the two-shot detectors category. The dataset was manually captured from the shooting range and expanded by generating more versatile data using Python code. Before the dataset was trained to develop models, it was resized (640x640) and augmented using Roboflow API. The trained models were then assessed on the test dataset, and their performance was compared using matrices like mAP50, mAP50-90, precision, and recall. The results showed that YOLOv8 models can detect multiple objects with good confidence scores.
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PV systems are used more and more. Not always is it possible to install them in the optimal direction for maximum energy output over the year. At the Johan Cruijff ArenA the PV panels are placed all around the roof in all possible directions. Panels oriented to the north will have a lower energy gain than those oriented to the south. The 42 panel groups are connected to 8 electricity meters. Of these 8 energy meters monthly kWh produced are available. The first assignment is to calculate the energy gains of the 42 panel groups, and connect these in the correct way with the 8 energy meter readings, so simulated data is in accordance with measured data.Of the year 2017 there are also main electricity meter readings available for every quarter of an hour. A problem with these readings is that only absolute values are given. When electricity is taken of the grid this is a positive reading, but when there is a surplus of solar energy and electricity is delivered to the grid, this is also a positive reading. To see the effect on the electricity demand of future energy measures, and to use the Seev4-City detailed CO2 savings calculation with the electricity mix of the grid, it is necessary to know the real electricity demand of the building.The second assignment is to use the calculations of the first assignment to separate the 15 minute electricity meter readings in that for real building demand and for PV production.This document first gives information for teachers (learning goals, possible activities, time needed, further reading), followed by the assignment for students.
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Het aantal banen neemt toe. Jaarlijks ontstaan er volgens CBS (2019) ongeveer 900 duizend vacatures. Deze keer is de verandering op de arbeidsmarkt niet het resultaat van één enkele factor, maar eerder een combinatie van vijf factoren: snelle technologische vooruitgang, diepgaande veranderingen in gezondheid en demografie, een groeiende economie, toenemende globalisering en belangrijke maatschappelijke veranderingen - die samen een groot deel van wat we als vanzelfsprekend beschouwen, fundamenteel transformeren (Gratton, 2011). Digitalisering en automatisering spelen een grote rol bij deze veranderingen. Er zijn optimistische voorspellingen dat nieuwe technologieën de arbeidsmarkt ten goede komen. Technologie verlaagt bijvoorbeeld de werkdruk. We zouden door technologie zelfs naar een kortere werkweek kunnen en nieuwe banen erbij krijgen, zodat niemand ongewild zonder werk komt te zitten (Ford, 2015; Giang, 2015; Mahdawi, 2017; MGI, 2017). Echter, de angst dat automatisering banen over gaat nemen en er een tekort aan werk gaat ontstaan, is ook een veelgehoorde zorg (Alexis, 2017; Ford, 2015; Giang, 2015; MGI, 2017; WRR. 2013).
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This study used historical data from a Park & Ride facility in Amsterdam to build a validated computer (Python) model to optimize battery and grid connection sizing. The case study modelled is equipped with 8 EV chargers (16 connections), an on-site supplementary battery, and a limited capacity grid connection. This model was then used to optimize the battery energy storage capacity and grid connection capacity for minimal annualized investment, using a future proof monthly load profile. A variety of battery control strategies were simulated using both the optimal system sizing and the current system sizing. The results were compared and a recommended control strategy presented, considering a number of performance metrics.
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Jos Fransen is geinterviewd door het televisieprogramma Nieuwsuur en heeft input geleverd voor de reportage over Coderen in het Basisonderwijs.
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The built environment requires energy-flexible buildings to reduce energy peak loads and to maximize the use of (decentralized) renewable energy sources. The challenge is to arrive at smart control strategies that respond to the increasing variations in both the energy demand as well as the variable energy supply. This enables grid integration in existing energy networks with limited capacity and maximises use of decentralized sustainable generation. Buildings can play a key role in the optimization of the grid capacity by applying demand-side management control. To adjust the grid energy demand profile of a building without compromising the user requirements, the building should acquire some energy flexibility capacity. The main ambition of the Brains for Buildings Work Package 2 is to develop smart control strategies that use the operational flexibility of non-residential buildings to minimize energy costs, reduce emissions and avoid spikes in power network load, without compromising comfort levels. To realise this ambition the following key components will be developed within the B4B WP2: (A) Development of open-source HVAC and electric services models, (B) development of energy demand prediction models and (C) development of flexibility management control models. This report describes the developed first two key components, (A) and (B). This report presents different prediction models covering various building components. The models are from three different types: white box models, grey-box models, and black-box models. Each model developed is presented in a different chapter. The chapters start with the goal of the prediction model, followed by the description of the model and the results obtained when applied to a case study. The models developed are two approaches based on white box models (1) White box models based on Modelica libraries for energy prediction of a building and its components and (2) Hybrid predictive digital twin based on white box building models to predict the dynamic energy response of the building and its components. (3) Using CO₂ monitoring data to derive either ventilation flow rate or occupancy. (4) Prediction of the heating demand of a building. (5) Feedforward neural network model to predict the building energy usage and its uncertainty. (6) Prediction of PV solar production. The first model aims to predict the energy use and energy production pattern of different building configurations with open-source software, OpenModelica, and open-source libraries, IBPSA libraries. The white-box model simulation results are used to produce design and control advice for increasing the building energy flexibility. The use of the libraries for making a model has first been tested in a simple residential unit, and now is being tested in a non-residential unit, the Haagse Hogeschool building. The lessons learned show that it is possible to model a building by making use of a combination of libraries, however the development of the model is very time consuming. The test also highlighted the need for defining standard scenarios to test the energy flexibility and the need for a practical visualization if the simulation results are to be used to give advice about potential increase of the energy flexibility. The goal of the hybrid model, which is based on a white based model for the building and systems and a data driven model for user behaviour, is to predict the energy demand and energy supply of a building. The model's application focuses on the use case of the TNO building at Stieltjesweg in Delft during a summer period, with a specific emphasis on cooling demand. Preliminary analysis shows that the monitoring results of the building behaviour is in line with the simulation results. Currently, development is in progress to improve the model predictions by including the solar shading from surrounding buildings, models of automatic shading devices, and model calibration including the energy use of the chiller. The goal of the third model is to derive recent and current ventilation flow rate over time based on monitoring data on CO₂ concentration and occupancy, as well as deriving recent and current occupancy over time, based on monitoring data on CO₂ concentration and ventilation flow rate. The grey-box model used is based on the GEKKO python tool. The model was tested with the data of 6 Windesheim University of Applied Sciences office rooms. The model had low precision deriving the ventilation flow rate, especially at low CO2 concentration rates. The model had a good precision deriving occupancy from CO₂ concentration and ventilation flow rate. Further research is needed to determine if these findings apply in different situations, such as meeting spaces and classrooms. The goal of the fourth chapter is to compare the working of a simplified white box model and black-box model to predict the heating energy use of a building. The aim is to integrate these prediction models in the energy management system of SME buildings. The two models have been tested with data from a residential unit since at the time of the analysis the data of a SME building was not available. The prediction models developed have a low accuracy and in their current form cannot be integrated in an energy management system. In general, black-box model prediction obtained a higher accuracy than the white box model. The goal of the fifth model is to predict the energy use in a building using a black-box model and measure the uncertainty in the prediction. The black-box model is based on a feed-forward neural network. The model has been tested with the data of two buildings: educational and commercial buildings. The strength of the model is in the ensemble prediction and the realization that uncertainty is intrinsically present in the data as an absolute deviation. Using a rolling window technique, the model can predict energy use and uncertainty, incorporating possible building-use changes. The testing in two different cases demonstrates the applicability of the model for different types of buildings. The goal of the sixth and last model developed is to predict the energy production of PV panels in a building with the use of a black-box model. The choice for developing the model of the PV panels is based on the analysis of the main contributors of the peak energy demand and peak energy delivery in the case of the DWA office building. On a fault free test set, the model meets the requirements for a calibrated model according to the FEMP and ASHRAE criteria for the error metrics. According to the IPMVP criteria the model should be improved further. The results of the performance metrics agree in range with values as found in literature. For accurate peak prediction a year of training data is recommended in the given approach without lagged variables. This report presents the results and lessons learned from implementing white-box, grey-box and black-box models to predict energy use and energy production of buildings or of variables directly related to them. Each of the models has its advantages and disadvantages. Further research in this line is needed to develop the potential of this approach.
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